Annotation of co-expression genes

PH01001072G0150's details annotation

1.Annotation

ICBR annotation: microtubule associated protein, putative, expressed

Blast result AT2G01910 : 1.00E-148
Blast annotation: Microtubule associated protein (MAP65/ASE1) family protein

2.Location

Scaffold: PH01001072
Strand: -

RegionStartEnd
gene109633116054
mRNA109633116054
exon109633111521
exon111610111684
exon111773111846
exon111924112011
exon112204112355
exon112466112604
exon112938113153
exon113551113808
exon114352114555
exon115347116054
CDS111186111521
CDS111610111684
CDS111773111846
CDS111924112011
CDS112204112355
CDS112466112604
CDS112938113153
CDS113551113808
CDS114352114555
CDS115347115415

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03999.11MAP65_ASE151250
PF03999.11MAP65_ASE1245477

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000226microtubule cytoskeleton organization
GO:0000910cytokinesis
GO:0008017microtubule binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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