PH01001076G0480's details annotation
1.Annotation
ICBR annotation: TBC domain containing protein, expressed
Blast result AT3G07890 : 1.00E-161
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein
2.Location
Scaffold: PH01001076
Strand: +
| Region | Start | End |
| gene | 305491 | 309550 |
| mRNA | 305491 | 309550 |
| exon | 305491 | 305726 |
| exon | 306046 | 306159 |
| exon | 306361 | 306925 |
| exon | 307521 | 307637 |
| exon | 307760 | 307896 |
| exon | 308009 | 308102 |
| exon | 308206 | 308283 |
| exon | 308416 | 308517 |
| exon | 308912 | 309550 |
| CDS | 305710 | 305726 |
| CDS | 306046 | 306159 |
| CDS | 306361 | 306925 |
| CDS | 307521 | 307637 |
| CDS | 307760 | 307896 |
| CDS | 308009 | 308102 |
| CDS | 308206 | 308283 |
| CDS | 308416 | 308517 |
| CDS | 308912 | 309043 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00566.17 | RabGAP-TBC | 189 | 381 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005097 | Rab GTPase activator activity |
| GO:0005622 | intracellular |
| GO:0032313 | regulation of Rab GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.