PH01001076G0520's details annotation
1.Annotation
ICBR annotation: ATP-dependent RNA helicase, putative, expressed
Blast result AT1G32490 : 9.00E-103
Blast annotation: RNA helicase family protein
2.Location
Scaffold: PH01001076
Strand: +
| Region | Start | End |
| gene | 342861 | 351554 |
| mRNA | 342861 | 351554 |
| exon | 342861 | 344322 |
| exon | 344421 | 344551 |
| exon | 344653 | 344850 |
| exon | 344929 | 345012 |
| exon | 345130 | 345216 |
| exon | 346683 | 346716 |
| exon | 347369 | 347482 |
| exon | 348104 | 348212 |
| exon | 348396 | 348459 |
| exon | 349416 | 349495 |
| exon | 349602 | 349669 |
| exon | 349826 | 349883 |
| exon | 350767 | 350824 |
| exon | 350905 | 350967 |
| exon | 351123 | 351191 |
| exon | 351343 | 351554 |
| CDS | 344223 | 344322 |
| CDS | 344421 | 344551 |
| CDS | 344653 | 344850 |
| CDS | 344929 | 345012 |
| CDS | 345130 | 345216 |
| CDS | 346683 | 346716 |
| CDS | 347369 | 347482 |
| CDS | 348104 | 348212 |
| CDS | 348396 | 348459 |
| CDS | 349416 | 349495 |
| CDS | 349602 | 349669 |
| CDS | 349826 | 349883 |
| CDS | 350767 | 350824 |
| CDS | 350905 | 350967 |
| CDS | 351123 | 351191 |
| CDS | 351343 | 351438 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0005622 | intracellular |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.