PH01001081G0360's details annotation
1.Annotation
ICBR annotation: cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed
Blast result AT5G40810 : 3.00E-119
Blast annotation: Cytochrome C1 family
2.Location
Scaffold: PH01001081
Strand: -
| Region | Start | End |
| gene | 221038 | 225084 |
| mRNA | 221038 | 225084 |
| exon | 221038 | 221363 |
| exon | 221407 | 221524 |
| exon | 221621 | 221737 |
| exon | 222988 | 223059 |
| exon | 223147 | 223426 |
| exon | 223716 | 223924 |
| exon | 224710 | 225084 |
| CDS | 221251 | 221363 |
| CDS | 221407 | 221524 |
| CDS | 221621 | 221737 |
| CDS | 222988 | 223059 |
| CDS | 223147 | 223426 |
| CDS | 223716 | 223924 |
| CDS | 224710 | 224769 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02167.14 | Cytochrom_C1 | 77 | 271 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | ubiquinol-cytochrome c reductase cytochrome c1 subuni[EC:1.10.2.2] | ko00190 | K00413 |
| Nitrogen metabolism | ubiquinol-cytochrome c reductase cytochrome c1 subuni[EC:1.10.2.2] | ko00910 | K00413 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0009055 | electron carrier activity |
| GO:0020037 | heme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.