PH01001083G0600's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G47110 : 0
Blast annotation: Leucine-rich repeat protein kinase family protein
2.Location
Scaffold: PH01001083
Strand: +
| Region | Start | End |
| gene | 409822 | 413604 |
| mRNA | 409822 | 413604 |
| exon | 409822 | 413004 |
| exon | 413095 | 413604 |
| CDS | 410325 | 413004 |
| CDS | 413095 | 413501 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000062 | RLK-Pelle_LRR-XII-1 (from iTAK) cell adhesion, TRAF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 29 | 68 |
| PF00560.32 | LRR_1 | 345 | 366 |
| PF13855.5 | LRR_8 | 396 | 452 |
| PF00069.24 | Pkinase | 705 | 948 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.