PH01001087G0150's details annotation
1.Annotation
ICBR annotation: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed
Blast result AT1G76550 : 0.00E+00
Blast annotation: Phosphofructokinase family protein
2.Location
Scaffold: PH01001087
Strand: -
| Region | Start | End |
| gene | 86956 | 94929 |
| mRNA | 86956 | 94929 |
| exon | 86956 | 87346 |
| exon | 87457 | 87622 |
| exon | 87816 | 87919 |
| exon | 88048 | 88164 |
| exon | 88243 | 88347 |
| exon | 88467 | 88523 |
| exon | 88612 | 88656 |
| exon | 88740 | 88850 |
| exon | 88929 | 89002 |
| exon | 89127 | 89220 |
| exon | 89308 | 89388 |
| exon | 89825 | 89878 |
| exon | 90167 | 90250 |
| exon | 90387 | 90454 |
| exon | 90540 | 90728 |
| exon | 93160 | 93272 |
| exon | 93898 | 94070 |
| exon | 94720 | 94929 |
| CDS | 87218 | 87346 |
| CDS | 87457 | 87622 |
| CDS | 87816 | 87919 |
| CDS | 88048 | 88164 |
| CDS | 88243 | 88347 |
| CDS | 88467 | 88523 |
| CDS | 88612 | 88656 |
| CDS | 88740 | 88850 |
| CDS | 88929 | 89002 |
| CDS | 89127 | 89220 |
| CDS | 89308 | 89388 |
| CDS | 89825 | 89878 |
| CDS | 90167 | 90250 |
| CDS | 90387 | 90454 |
| CDS | 90540 | 90728 |
| CDS | 93160 | 93272 |
| CDS | 93898 | 94070 |
| CDS | 94720 | 94809 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000475 | TKL-Pl-6 (from iTAK) carbohydrate phosphorylation, RLK-Pelle_RLCK-VIIa-2 (from iTAK) galactokinase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, fructose_6-phosphate_metabolic_process galactose metabolic process, Fructose_and_mannose_metabolism Galactose_metabolism ATP binding, 6-phosphofructokinase activity, kinase activity, |
| coexpression network | CFinderM000589 | TKL-Pl-1 (from iTAK) TKL-Pl-6 (from iTAK) Fructose_and_mannose_metabolism 6-phosphofructokinase complex, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, cysteine-type endopeptidase activity, 6-phosphofructokinase activity, protein kinase activity, ATP binding, transferase activity, transferring phosphorus-containing groups, protein phosphorylation, fructose_6-phosphate_metabolic_process RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM000925 | Ribosome translation, fructose_6-phosphate_metabolic_process Fructose_and_mannose_metabolism GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) diphosphate-fructose-6-phosphate 1-phosphotransferase activity, structural constituent of ribosome, large ribosomal subunit, 6-phosphofructokinase complex, 6-phosphofructokinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00365.19 | PFK | 88 | 454 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fructose and mannose metabolism | pyrophosphate--fructose-6-phosphate 1-phosphotransferas[EC:2.7.1.90] | ko00051 | K00895 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003872 | 6-phosphofructokinase activity |
| GO:0005524 | ATP binding |
| GO:0005945 | 6-phosphofructokinase complex |
| GO:0006002 | fructose 6-phosphate metabolic process |
| GO:0006096 | glycolysis |
| GO:0047334 | diphosphate-fructose-6-phosphate 1-phosphotransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.