PH01001088G0320's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT2G01470 : 2.00E-69
Blast annotation: SEC12P-like 2 protein
2.Location
Scaffold: PH01001088
Strand: -
| Region | Start | End |
| gene | 215755 | 222480 |
| mRNA | 215755 | 222480 |
| exon | 215755 | 216237 |
| exon | 217395 | 217462 |
| exon | 217550 | 217666 |
| exon | 217778 | 217898 |
| exon | 217989 | 218064 |
| exon | 218134 | 218203 |
| exon | 218325 | 218416 |
| exon | 219422 | 219572 |
| exon | 220980 | 221074 |
| exon | 221167 | 222480 |
| CDS | 215969 | 216237 |
| CDS | 217395 | 217462 |
| CDS | 217550 | 217666 |
| CDS | 217778 | 217898 |
| CDS | 217989 | 218064 |
| CDS | 218134 | 218203 |
| CDS | 218325 | 218416 |
| CDS | 219422 | 219572 |
| CDS | 220980 | 221074 |
| CDS | 221167 | 221427 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 154 | 176 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | prolactin regulatory element-binding protein | ko04141 | K14003 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.