Annotation of co-expression genes

PH01001092G0100's details annotation

1.Annotation

ICBR annotation: STE_PAK_Ste20_Slob_Wnk.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed

Blast result AT3G18750 : 3.40E-98
Blast annotation: with no lysine (K) kinase 6

2.Location

Scaffold: PH01001092
Strand: +

RegionStartEnd
gene4903652820
mRNA4903652820
exon4903649226
exon4997450245
exon5062850848
exon5104851205
exon5130151598
exon5167852820
CDS4912849226
CDS4997450245
CDS5062850848
CDS5104851205
CDS5130151598
CDS5167851937

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000047isomerase activity,
Brassinosteroid_biosynthesis
carbohydrate metabolic process,
carbohydrate binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase48291

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.