Annotation of co-expression genes

PH01001094G0470's details annotation

1.Annotation

ICBR annotation: potassium transporter, putative, expressed

Blast result AT2G40540 : 0.00E+00
Blast annotation: potassium transporter 2

2.Location

Scaffold: PH01001094
Strand: +

RegionStartEnd
gene315933321330
mRNA315933321330
exon315933316807
exon316900317134
exon317258317503
exon317610317663
exon318202318462
exon318575318627
exon318720318843
exon318979319233
exon319443319522
exon319706319971
exon320213321330
CDS316769316807
CDS316900317134
CDS317258317503
CDS317610317663
CDS318202318462
CDS318575318627
CDS318720318843
CDS318979319233
CDS319443319522
CDS319706319971
CDS320213320879

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02705.15K_trans25448

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0015079potassium ion transmembrane transporter activity
GO:0016020membrane
GO:0071805potassium ion transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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