Annotation of co-expression genes

PH01001095G0560's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT1G47500 : 6.10E-99
Blast annotation: RNA-binding protein 47C

2.Location

Scaffold: PH01001095
Strand: -

RegionStartEnd
gene354302362448
mRNA354302362448
exon354302354748
exon356200356343
exon358683358779
exon358908359038
exon359134359189
exon359483359936
exon361980362448
CDS354743354748
CDS356200356343
CDS358683358779
CDS358908359038
CDS359134359189
CDS359483359936
CDS361980362351

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000741Oxidative_phosphorylation
ATP metabolic process,
proton-transporting two-sector ATPase complex, catalytic domain,
proton transport,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
proton-transporting ATPase activity, rotational mechanism,
ATP hydrolysis coupled proton transport,
Phagosome
proton-transporting V-type ATPase, V1 domain,
proton-transporting ATP synthase complex, catalytic core F(1),
ATP synthesis coupled proton transport,
hydrogen ion transporting ATP synthase activity, rotational mechanism,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1101167
PF00076.21RRM_1194264
PF00076.21RRM_1295358

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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