PH01001096G0100's details annotation
1.Annotation
ICBR annotation: vesicle transport v-SNARE protein, putative, expressed
Blast result AT5G50440 : 2.10E-68
Blast annotation: membrin 12
2.Location
Scaffold: PH01001096
Strand: +
| Region | Start | End |
| gene | 74282 | 79695 |
| mRNA | 74282 | 79695 |
| exon | 74282 | 75353 |
| exon | 75386 | 75441 |
| exon | 77856 | 77976 |
| exon | 78066 | 78215 |
| exon | 78358 | 79695 |
| CDS | 75159 | 75353 |
| CDS | 75386 | 75441 |
| CDS | 77856 | 77976 |
| CDS | 78066 | 78215 |
| CDS | 78358 | 78519 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12352.7 | V-SNARE_C | 151 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| SNARE interactions in vesicular transport | golgi SNAP receptor complex member 2 | ko04130 | K08496 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005795 | Golgi stack |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.