PH01001101G0220's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G39950 : 2.00E-68
Blast annotation: -
2.Location
Scaffold: PH01001101
Strand: -
| Region | Start | End |
| gene | 172947 | 179391 |
| mRNA | 172947 | 179391 |
| exon | 172947 | 173971 |
| exon | 174051 | 175217 |
| exon | 175445 | 175688 |
| exon | 178576 | 178691 |
| exon | 178808 | 179391 |
| CDS | 173792 | 173971 |
| CDS | 174051 | 175217 |
| CDS | 175445 | 175688 |
| CDS | 178576 | 178691 |
| CDS | 178808 | 179053 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001082 | IWS1 Transcription_Regulator(from iTAK) protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.