PH01001103G0520's details annotation
1.Annotation
ICBR annotation: YT521-B, putative, expressed
Blast result AT1G55500 : 1.90E-96
Blast annotation: evolutionarily conserved C-terminal region 4
2.Location
Scaffold: PH01001103
Strand: +
| Region | Start | End |
| gene | 352530 | 359356 |
| mRNA | 352530 | 359356 |
| exon | 352530 | 353393 |
| exon | 355229 | 355305 |
| exon | 355441 | 355573 |
| exon | 355685 | 355749 |
| exon | 355905 | 356130 |
| exon | 356795 | 357300 |
| exon | 357395 | 357607 |
| exon | 357821 | 357967 |
| exon | 358340 | 359356 |
| CDS | 353309 | 353393 |
| CDS | 355229 | 355305 |
| CDS | 355441 | 355573 |
| CDS | 355685 | 355749 |
| CDS | 355905 | 356130 |
| CDS | 356795 | 357300 |
| CDS | 357395 | 357607 |
| CDS | 357821 | 357967 |
| CDS | 358340 | 358546 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04146.14 | YTH | 312 | 449 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.