PH01001108G0330's details annotation
1.Annotation
ICBR annotation: lipase class 3 family protein, putative, expressed
Blast result AT5G50890 : 5.90E-73
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01001108
Strand: -
| Region | Start | End |
| gene | 227774 | 229434 |
| mRNA | 227774 | 229434 |
| exon | 227774 | 228504 |
| exon | 228612 | 228839 |
| exon | 228985 | 229434 |
| CDS | 227838 | 228504 |
| CDS | 228612 | 228839 |
| CDS | 228985 | 229307 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000200 | |
| coexpression network | CFinderM000651 | cysteine-type endopeptidase activity, exocyst, protein disulfide oxidoreductase activity, exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.