PH01001112G0070's details annotation
1.Annotation
ICBR annotation: translation initiation factor SUI1, putative, expressed
Blast result AT1G54290 : 6.20E-52
Blast annotation: Translation initiation factor SUI1 family protein
2.Location
Scaffold: PH01001112
Strand: -
| Region | Start | End |
| gene | 30781 | 33585 |
| mRNA | 30781 | 33585 |
| exon | 30781 | 31045 |
| exon | 31130 | 31183 |
| exon | 31270 | 31481 |
| exon | 31827 | 31864 |
| exon | 31953 | 33585 |
| CDS | 31001 | 31045 |
| CDS | 31130 | 31183 |
| CDS | 31270 | 31481 |
| CDS | 31827 | 31864 |
| CDS | 31953 | 31981 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001070 | GTnc GlycosylTransferases checkpoint_clamp_complex cell_cycle_checkpoint DNA_damage_checkpoint cullin-RING ubiquitin ligase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01253.21 | SUI1 | 30 | 104 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 1 | ko03013 | K03113 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003743 | translation initiation factor activity |
| GO:0006413 | translational initiation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.