Annotation of co-expression genes

PH01001114G0140's details annotation

1.Annotation

ICBR annotation: ribonuclease 2-5A family protein, expressed

Blast result AT2G17520 : 2.00E-150
Blast annotation: Endoribonuclease/protein kinase IRE1-like

2.Location

Scaffold: PH01001114
Strand: +

RegionStartEnd
gene97447103725
mRNA97447103725
exon9744798767
exon9950499693
exon99774101116
exon101692101864
exon102019102265
exon102362102656
exon103424103725
CDS9851798767
CDS9950499693
CDS99774101116
CDS101692101864
CDS102019102265
CDS102362102656
CDS103424103570

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase482747
PF06479.11Ribonuc_2-5A753876

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004540ribonuclease activity
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006397mRNA processing
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.