PH01001114G0480's details annotation
1.Annotation
ICBR annotation: ethylene-responsive protein related, putative, expressed
Blast result AT1G31050 : 2.10E-38
Blast annotation: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
2.Location
Scaffold: PH01001114
Strand: +
| Region | Start | End |
| gene | 334473 | 342962 |
| mRNA | 334473 | 342962 |
| exon | 334473 | 334955 |
| exon | 335975 | 336784 |
| exon | 336885 | 337019 |
| exon | 338131 | 338202 |
| exon | 340093 | 340158 |
| exon | 340981 | 341019 |
| exon | 341428 | 341597 |
| exon | 341725 | 341794 |
| exon | 342704 | 342962 |
| CDS | 334638 | 334955 |
| CDS | 335975 | 336784 |
| CDS | 336885 | 337019 |
| CDS | 338131 | 338202 |
| CDS | 340093 | 340158 |
| CDS | 340981 | 341019 |
| CDS | 341428 | 341597 |
| CDS | 341725 | 341794 |
| CDS | 342704 | 342877 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.