PH01001115G0740's details annotation
1.Annotation
ICBR annotation: SH3 domain containing protein, expressed
Blast result AT2G07360 : 3.00E-103
Blast annotation: SH3 domain-containing protein
2.Location
Scaffold: PH01001115
Strand: -
| Region | Start | End |
| gene | 419150 | 423398 |
| mRNA | 419150 | 423398 |
| exon | 419150 | 419691 |
| exon | 419992 | 420054 |
| exon | 420196 | 420302 |
| exon | 420831 | 421059 |
| exon | 421384 | 421476 |
| exon | 421572 | 421631 |
| exon | 421678 | 423398 |
| CDS | 419587 | 419691 |
| CDS | 419992 | 420054 |
| CDS | 420196 | 420302 |
| CDS | 420831 | 421059 |
| CDS | 421384 | 421476 |
| CDS | 421572 | 421631 |
| CDS | 421678 | 421974 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000263 | Spliceosome HRT-like Transcription_Regulator(from PlantTFDB) HRT Transcription_Regulator(from iTAK) nucleotide binding, nucleic acid binding, serine-type endopeptidase activity, |
| coexpression network | CFinderM001747 | NAK (from iTAK) Sulfur_relay_system Thiamine_metabolism Golgi apparatus, cysteine metabolic process, membrane coat, clathrin adaptor complex, cysteine desulfurase activity, regulation of ARF protein signal transduction, cytoskeleton organization, ARF guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.