PH01001116G0310's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT5G67570 : 9.00E-73
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01001116
Strand: +
| Region | Start | End |
| gene | 204116 | 207922 |
| mRNA | 204116 | 207922 |
| exon | 204116 | 204873 |
| exon | 205699 | 205890 |
| exon | 206022 | 206103 |
| exon | 206221 | 206412 |
| exon | 206538 | 206651 |
| exon | 207293 | 207475 |
| exon | 207627 | 207922 |
| CDS | 204314 | 204873 |
| CDS | 205699 | 205890 |
| CDS | 206022 | 206103 |
| CDS | 206221 | 206412 |
| CDS | 206538 | 206651 |
| CDS | 207293 | 207475 |
| CDS | 207627 | 207683 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000153 | |
| coexpression network | CFinderM000550 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 253 | 278 |
| PF13812.5 | PPR_3 | 333 | 375 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.