PH01001119G0500's details annotation
1.Annotation
ICBR annotation: GTP binding protein, putative, expressed
Blast result AT2G38840 : 0.00E+00
Blast annotation: Guanylate-binding family protein
2.Location
Scaffold: PH01001119
Strand: -
| Region | Start | End |
| gene | 369286 | 377878 |
| mRNA | 369286 | 377878 |
| exon | 369286 | 370104 |
| exon | 370768 | 370980 |
| exon | 371262 | 371420 |
| exon | 372752 | 372982 |
| exon | 373067 | 373234 |
| exon | 373433 | 373498 |
| exon | 373587 | 373606 |
| exon | 374779 | 374839 |
| exon | 375306 | 375366 |
| exon | 375559 | 375623 |
| exon | 375702 | 375759 |
| exon | 375858 | 375975 |
| exon | 376182 | 376251 |
| exon | 376394 | 376496 |
| exon | 377406 | 377878 |
| CDS | 369829 | 370104 |
| CDS | 370768 | 370980 |
| CDS | 371262 | 371420 |
| CDS | 372752 | 372982 |
| CDS | 373067 | 373234 |
| CDS | 373433 | 373498 |
| CDS | 373587 | 373606 |
| CDS | 374779 | 374839 |
| CDS | 375306 | 375366 |
| CDS | 375559 | 375623 |
| CDS | 375702 | 375759 |
| CDS | 375858 | 375975 |
| CDS | 376182 | 376251 |
| CDS | 376394 | 376496 |
| CDS | 377406 | 377515 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02263.18 | GBP | 49 | 279 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.