PH01001121G0400's details annotation
1.Annotation
ICBR annotation: ER lumen protein retaining receptor, putative, expressed
Blast result AT3G25040 : 2.40E-97
Blast annotation: endoplasmic reticulum retention defective 2B
2.Location
Scaffold: PH01001121
Strand: -
| Region | Start | End |
| gene | 232960 | 237878 |
| mRNA | 232960 | 237878 |
| exon | 232960 | 233591 |
| exon | 233666 | 233729 |
| exon | 233822 | 233895 |
| exon | 234213 | 234328 |
| exon | 234545 | 234810 |
| exon | 236238 | 237878 |
| CDS | 233555 | 233591 |
| CDS | 233666 | 233729 |
| CDS | 233822 | 233895 |
| CDS | 234213 | 234328 |
| CDS | 234545 | 234810 |
| CDS | 236238 | 236328 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000879 | Alanine,_aspartate_and_glutamate_metabolism GNAT Transcription_Regulator(from iTAK) protein retention in ER lumen, nitrogen compound metabolic process, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, ER retention sequence binding, N-acetyltransferase_activity |
| coexpression network | CFinderM001451 | Protein_processing_in_endoplasmic_reticulum Protein_export mitosis, protein retention in ER lumen, ER retention sequence binding, spliceosomal complex, glycerol ether metabolic process, isomerase activity, |
| coexpression network | CFinderM001554 | protein retention in ER lumen, ER retention sequence binding, peptidyl-prolyl cis-trans isomerase activity, acid-amino acid ligase activity, |
| coexpression network | CFinderM001555 | protein retention in ER lumen, RLK-Pelle_DLSV (from iTAK) ER retention sequence binding, |
| coexpression network | CFinderM001678 | mRNA_cleavage_and_polyadenylation_specificity_factor_complex mRNA cleavage, protein retention in ER lumen, mRNA_polyadenylation RNA metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity ER retention sequence binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00810.17 | ER_lumen_recept | 28 | 171 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006621 | protein retention in ER lumen |
| GO:0016021 | integral to membrane |
| GO:0046923 | ER retention sequence binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.