PH01001125G0050's details annotation
1.Annotation
ICBR annotation: ACT domain containing protein, expressed
Blast result AT1G76990 : 2.10E-74
Blast annotation: ACT domain repeat 3
2.Location
Scaffold: PH01001125
Strand: +
| Region | Start | End |
| gene | 27102 | 30079 |
| mRNA | 27102 | 30079 |
| exon | 27102 | 27612 |
| exon | 27735 | 27780 |
| exon | 27883 | 28081 |
| exon | 28133 | 28461 |
| exon | 28559 | 28689 |
| exon | 28753 | 28897 |
| exon | 29026 | 29085 |
| exon | 29226 | 30079 |
| CDS | 27542 | 27612 |
| CDS | 27735 | 27780 |
| CDS | 27883 | 28081 |
| CDS | 28133 | 28461 |
| CDS | 28559 | 28689 |
| CDS | 28753 | 28897 |
| CDS | 29026 | 29085 |
| CDS | 29226 | 29615 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01842.24 | ACT | 330 | 386 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016597 | amino acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.