PH01001127G0180's details annotation
1.Annotation
ICBR annotation: transmembrane protein 50A, putative, expressed
Blast result AT1G36980 : 3.80E-50
Blast annotation: -
2.Location
Scaffold: PH01001127
Strand: +
| Region | Start | End |
| gene | 115778 | 120120 |
| mRNA | 115778 | 120120 |
| exon | 115778 | 116080 |
| exon | 116185 | 116284 |
| exon | 118575 | 118727 |
| exon | 118959 | 119073 |
| exon | 119462 | 120120 |
| CDS | 115945 | 116080 |
| CDS | 116185 | 116284 |
| CDS | 118575 | 118727 |
| CDS | 118959 | 119073 |
| CDS | 119462 | 119728 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05255.10 | UPF0220 | 14 | 129 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.