PH01001134G0580's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G26750 : 2.00E-08
Blast annotation: -
2.Location
Scaffold: PH01001134
Strand: +
| Region | Start | End |
| gene | 402495 | 405249 |
| mRNA | 402495 | 405249 |
| exon | 402495 | 402888 |
| exon | 403331 | 403419 |
| exon | 403628 | 403693 |
| exon | 404595 | 405249 |
| CDS | 402871 | 402888 |
| CDS | 403331 | 403419 |
| CDS | 403628 | 403693 |
| CDS | 404595 | 404811 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001483 | eukaryotic translation initiation factor 3 complex, cytoplasm, valyl-tRNA aminoacylation, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding G-protein coupled receptor signaling pathway, Aminoacyl-tRNA_biosynthesis |
| coexpression network | CFinderM001712 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), Aminoacyl-tRNA_biosynthesis ATP_catabolic_process valyl-tRNA aminoacylation, ATP biosynthetic process, ATP metabolic process, G-protein coupled receptor signaling pathway, G-protein_beta/gamma-subunit_complex_binding guanyl nucleotide binding, valine-tRNA ligase activity, aminoacyl-tRNA_editing_activity proton transport, |
| coexpression network | CFinderM001791 | valyl-tRNA aminoacylation, eukaryotic translation initiation factor 3 complex, cytoplasm, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis NAC Transcription_Regulator(from PlantTFDB) tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.