Annotation of co-expression genes

PH01001135G0160's details annotation

1.Annotation

ICBR annotation: membrane protein, putative, expressed

Blast result AT2G36630 : 6.00E-129
Blast annotation: Sulfite exporter TauE/SafE family protein

2.Location

Scaffold: PH01001135
Strand: -

RegionStartEnd
gene102471107760
mRNA102471107760
exon102471103100
exon103192103285
exon105067105306
exon105646105696
exon106430106497
exon106581106635
exon106725106786
exon106920107120
exon107221107380
exon107466107760
CDS102916103100
CDS103192103285
CDS105067105306
CDS105646105696
CDS106430106497
CDS106581106635
CDS106725106786
CDS106920107120
CDS107221107380
CDS107466107672

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000561GT4 GlycosylTransferases
NADP_biosynthetic_process
phosphorylation,
NAD+ kinase activity,
peptidyl-prolyl cis-trans isomerase activity,
coexpression networkCFinderM000562GT4 GlycosylTransferases
biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01925.18TauE81198
PF01925.18TauE258447

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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