Annotation of co-expression genes

PH01001137G0480's details annotation

1.Annotation

ICBR annotation: glucose-6-phosphate isomerase, putative, expressed

Blast result AT4G24620 : 0.00E+00
Blast annotation: phosphoglucose isomerase 1

2.Location

Scaffold: PH01001137
Strand: -

RegionStartEnd
gene273012278895
mRNA273012278895
exon273012273200
exon273318273384
exon274178274256
exon274343274499
exon274595274733
exon274809274861
exon274964275071
exon275239275307
exon275541275684
exon276462276560
exon277068277190
exon277863278895
CDS273063273200
CDS273318273384
CDS274178274256
CDS274343274499
CDS274595274733
CDS274809274861
CDS274964275071
CDS275239275307
CDS275541275684
CDS276462276560
CDS277068277190
CDS277863278063

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000809glucose-6-phosphate isomerase activity,
transcription factor TFIID complex,
gluconeogenesis,
transcription initiation, DNA-dependent,
glycolysis,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00342.18PGI14152
PF00342.18PGI190287
PF00342.18PGI319378

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004347glucose-6-phosphate isomerase activity
GO:0006094gluconeogenesis
GO:0006096glycolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.