PH01001138G0400's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat domain containing protein, expressed
Blast result AT4G28600 : 0.00E+00
Blast annotation: no pollen germination related 2
2.Location
Scaffold: PH01001138
Strand: +
| Region | Start | End |
| gene | 276392 | 291946 |
| mRNA | 276392 | 291946 |
| exon | 276392 | 277912 |
| exon | 278621 | 278870 |
| exon | 279062 | 280275 |
| exon | 280819 | 280969 |
| exon | 281351 | 281588 |
| exon | 282441 | 282522 |
| exon | 282878 | 282931 |
| exon | 285320 | 285465 |
| exon | 286015 | 286102 |
| exon | 286235 | 286330 |
| exon | 286808 | 287083 |
| exon | 287942 | 288145 |
| exon | 288240 | 288392 |
| exon | 289009 | 289161 |
| exon | 289395 | 289487 |
| exon | 290265 | 290479 |
| exon | 291294 | 291946 |
| CDS | 277718 | 277912 |
| CDS | 278621 | 278870 |
| CDS | 279062 | 280275 |
| CDS | 280819 | 280969 |
| CDS | 281351 | 281588 |
| CDS | 282441 | 282522 |
| CDS | 282878 | 282931 |
| CDS | 285320 | 285465 |
| CDS | 286015 | 286102 |
| CDS | 286235 | 286330 |
| CDS | 286808 | 287083 |
| CDS | 287942 | 288145 |
| CDS | 288240 | 288392 |
| CDS | 289009 | 289161 |
| CDS | 289395 | 289487 |
| CDS | 290265 | 290479 |
| CDS | 291294 | 291489 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.