PH01001141G0100's details annotation
1.Annotation
ICBR annotation: uncharacterized glycosyltransferase, putative, expressed
Blast result AT3G57520 : 0.00E+00
Blast annotation: seed imbibition 2
2.Location
Scaffold: PH01001141
Strand: +
| Region | Start | End |
| gene | 135026 | 139047 |
| mRNA | 135026 | 139047 |
| exon | 135026 | 135545 |
| exon | 135961 | 136193 |
| exon | 136520 | 136610 |
| exon | 136715 | 136763 |
| exon | 136887 | 137771 |
| exon | 137868 | 138070 |
| exon | 138191 | 139047 |
| CDS | 135355 | 135545 |
| CDS | 135961 | 136193 |
| CDS | 136520 | 136610 |
| CDS | 136715 | 136763 |
| CDS | 136887 | 137771 |
| CDS | 137868 | 138070 |
| CDS | 138191 | 138806 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000219 | TKL-Pl-6 (from iTAK) potassium_ion_transmembrane_transport bZIP Transcription_Regulator(from PlantTFDB) GH36 Glycoside_Hydrolases potassium ion transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH36 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05691.11 | Raffinose_syn | 8 | 738 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Galactose metabolism | raffinose synthase [EC:2.4.1.82] | ko00052 | K06617 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.