PH01001143G0650's details annotation
1.Annotation
ICBR annotation: chaperone protein dnaJ 49, putative, expressed
Blast result AT3G57340 : 1.20E-58
Blast annotation: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
2.Location
Scaffold: PH01001143
Strand: +
| Region | Start | End |
| gene | 408059 | 412195 |
| mRNA | 408059 | 412195 |
| exon | 408059 | 408539 |
| exon | 409276 | 410271 |
| exon | 411998 | 412195 |
| CDS | 408100 | 408539 |
| CDS | 409276 | 410271 |
| CDS | 411998 | 412193 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000810 | CAMTA Transcription_Regulator(from PlantTFDB) glycerol-3-phosphate dehydrogenase complex, Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 260 | 321 |
| PF09320.10 | DUF1977 | 431 | 466 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | DnaJ homolog subfamily B member 12 | ko04141 | K09518 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.