PH01001144G0090's details annotation
1.Annotation
ICBR annotation: homeobox domain containing protein, expressed
Blast result AT4G32980 : 3.80E-49
Blast annotation: homeobox gene 1
2.Location
Scaffold: PH01001144
Strand: -
| Region | Start | End |
| gene | 57707 | 61344 |
| mRNA | 57707 | 61344 |
| exon | 57707 | 58288 |
| exon | 58389 | 58449 |
| exon | 58678 | 59045 |
| exon | 59124 | 61344 |
| CDS | 58148 | 58288 |
| CDS | 58389 | 58449 |
| CDS | 58678 | 59045 |
| CDS | 59124 | 60182 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-BELL |
| Transcription_Regulator(from PlantTFDB) | TALE |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07526.10 | POX | 260 | 404 |
| PF05920.10 | Homeobox_KN | 468 | 507 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.