PH01001146G0220's details annotation
1.Annotation
ICBR annotation: protein of unknown function domain containing protein, expressed
Blast result AT1G29250 : 7.70E-46
Blast annotation: Alba DNA/RNA-binding protein
2.Location
Scaffold: PH01001146
Strand: +
| Region | Start | End |
| gene | 169560 | 173656 |
| mRNA | 169560 | 173656 |
| exon | 169560 | 169881 |
| exon | 170287 | 170335 |
| exon | 172279 | 172341 |
| exon | 172421 | 172485 |
| exon | 172585 | 173656 |
| CDS | 169765 | 169881 |
| CDS | 170287 | 170335 |
| CDS | 172279 | 172341 |
| CDS | 172421 | 172485 |
| CDS | 172585 | 172689 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000369 | translational elongation, Ribosome Ribosome structural constituent of ribosome, intracellular, ubiquitin thiolesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01918.20 | Alba | 20 | 73 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.