PH01001155G0560's details annotation
1.Annotation
ICBR annotation: agenet domain containing protein, putative, expressed
Blast result AT4G17330 : 1.20E-41
Blast annotation: G2484-1 protein
2.Location
Scaffold: PH01001155
Strand: -
| Region | Start | End |
| gene | 402764 | 410340 |
| mRNA | 402764 | 410340 |
| exon | 402764 | 403322 |
| exon | 403474 | 403576 |
| exon | 404033 | 404139 |
| exon | 404218 | 405798 |
| exon | 405886 | 405996 |
| exon | 406465 | 406696 |
| exon | 406806 | 407233 |
| exon | 407651 | 407869 |
| exon | 407963 | 410340 |
| CDS | 403078 | 403322 |
| CDS | 403474 | 403576 |
| CDS | 404033 | 404139 |
| CDS | 404218 | 405798 |
| CDS | 405886 | 405996 |
| CDS | 406465 | 406696 |
| CDS | 406806 | 407233 |
| CDS | 407651 | 407869 |
| CDS | 407963 | 410042 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05641.11 | Agenet | 1582 | 1646 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.