PH01001158G0320's details annotation
1.Annotation
ICBR annotation: DNA binding protein, putative, expressed
Blast result AT1G64570 : 4.00E-136
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01001158
Strand: +
| Region | Start | End |
| gene | 161047 | 170059 |
| mRNA | 161047 | 170059 |
| exon | 161047 | 162585 |
| exon | 162684 | 163044 |
| exon | 163502 | 163586 |
| exon | 164188 | 164244 |
| exon | 165016 | 165075 |
| exon | 165169 | 165387 |
| exon | 165485 | 166756 |
| exon | 167585 | 170059 |
| CDS | 161316 | 162585 |
| CDS | 162684 | 163044 |
| CDS | 163502 | 163586 |
| CDS | 164188 | 164244 |
| CDS | 165016 | 165075 |
| CDS | 165169 | 165387 |
| CDS | 165485 | 166756 |
| CDS | 167585 | 167938 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000038 | bHLH Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000041 | Oxidative_phosphorylation respiratory electron transport chain, mitochondrial inner membrane, |
| coexpression network | CFinderM000140 | Ribosome translation, Ribosome structural constituent of ribosome, intracellular, |
| coexpression network | CFinderM000166 | Ribosome translation, Ribosome structural constituent of ribosome, intracellular, mitochondrial envelope, cytochrome-c oxidase activity, polysaccharide_binding ubiquitin thiolesterase activity, Oxidative_phosphorylation ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000173 | response to oxidative stress, peroxidase activity, heme binding, oxidation-reduction process, Phenylpropanoid_biosynthesis Phenylalanine_metabolism Methane_metabolism |
| coexpression network | CFinderM000175 | Ribosome translation, Ribosome small ribosomal subunit, structural constituent of ribosome, intracellular, eukaryotic translation elongation factor 1 complex, translational elongation, translation elongation factor activity, |
| coexpression network | CFinderM000519 | LIM Transcription_Regulator(from iTAK) mitochondrial inner membrane, |
| coexpression network | CFinderM000910 | translation, phosphopyruvate hydratase complex, Ribosome intracellular, small ribosomal subunit, phosphopyruvate hydratase activity, structural constituent of ribosome, glycolysis, Methane_metabolism RNA_degradation Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.