PH01001161G0140's details annotation
1.Annotation
ICBR annotation: periplasmic beta-glucosidase precursor, putative, expressed
Blast result AT5G20950 : 0.00E+00
Blast annotation: Glycosyl hydrolase family protein
2.Location
Scaffold: PH01001161
Strand: -
| Region | Start | End |
| gene | 69663 | 72691 |
| mRNA | 69663 | 72691 |
| exon | 69663 | 70305 |
| exon | 70415 | 70619 |
| exon | 70700 | 70882 |
| exon | 71045 | 71149 |
| exon | 71256 | 71499 |
| exon | 71623 | 71765 |
| exon | 71874 | 71964 |
| exon | 72169 | 72373 |
| exon | 72460 | 72691 |
| CDS | 69824 | 70305 |
| CDS | 70415 | 70619 |
| CDS | 70700 | 70882 |
| CDS | 71045 | 71149 |
| CDS | 71256 | 71499 |
| CDS | 71623 | 71765 |
| CDS | 71874 | 71964 |
| CDS | 72169 | 72373 |
| CDS | 72460 | 72676 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000361 | GH3 Glycoside_Hydrolases integral to membrane, lipid transport, Cyanoamino_acid_metabolism Phenylpropanoid_biosynthesis Starch_and_sucrose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH3 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00933.20 | Glyco_hydro_3 | 46 | 373 |
| PF01915.21 | Glyco_hydro_3_C | 410 | 619 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | beta-glucosidase [EC:3.2.1.21] | ko00500 | K05349 |
| Cyanoamino acid metabolism | beta-glucosidase [EC:3.2.1.21] | ko00460 | K05349 |
| Phenylpropanoid biosynthesis | beta-glucosidase [EC:3.2.1.21] | ko00940 | K05349 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.