PH01001161G0370's details annotation
1.Annotation
ICBR annotation: oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
Blast result AT3G03980 : 5.20E-73
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01001161
Strand: -
| Region | Start | End |
| gene | 269846 | 271046 |
| mRNA | 269846 | 271046 |
| exon | 269846 | 270584 |
| exon | 270640 | 271046 |
| CDS | 270213 | 270584 |
| CDS | 270640 | 270981 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13561.5 | adh_short_C2 | 25 | 263 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid biosynthesis | 3-oxoacyl-[acyl-carrier-protein] reductase [EC:1.1.1.100] | ko00061 | K00059 |
| Biosynthesis of unsaturated fatty acids | 3-oxoacyl-[acyl-carrier-protein] reductase [EC:1.1.1.100] | ko01040 | K00059 |
| Biotin metabolism | 3-oxoacyl-[acyl-carrier-protein] reductase [EC:1.1.1.100] | ko00780 | K00059 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.