PH01001162G0350's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative, expressed
Blast result AT3G14470 : 5.50E-45
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01001162
Strand: +
| Region | Start | End |
| gene | 255927 | 268414 |
| mRNA | 255927 | 268414 |
| exon | 255927 | 257707 |
| exon | 261621 | 262786 |
| exon | 263509 | 264002 |
| exon | 264291 | 264442 |
| exon | 265007 | 266199 |
| exon | 266357 | 266878 |
| exon | 267358 | 267471 |
| exon | 267711 | 267759 |
| exon | 268117 | 268414 |
| CDS | 257407 | 257707 |
| CDS | 261621 | 262786 |
| CDS | 263509 | 264002 |
| CDS | 264291 | 264442 |
| CDS | 265007 | 266199 |
| CDS | 266357 | 266878 |
| CDS | 267358 | 267471 |
| CDS | 267711 | 267759 |
| CDS | 268117 | 268259 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 219 | 487 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.