PH01001163G0190's details annotation
1.Annotation
ICBR annotation: TUDOR protein with multiple SNc domains, putative, expressed
Blast result AT5G07350 : 0.00E+00
Blast annotation: TUDOR-SN protein 1
2.Location
Scaffold: PH01001163
Strand: +
| Region | Start | End |
| gene | 115770 | 124972 |
| mRNA | 115770 | 124972 |
| exon | 115770 | 116485 |
| exon | 116969 | 117133 |
| exon | 117722 | 117835 |
| exon | 117920 | 118021 |
| exon | 118122 | 118328 |
| exon | 118407 | 118625 |
| exon | 118707 | 118814 |
| exon | 118949 | 119119 |
| exon | 119214 | 119411 |
| exon | 119517 | 119876 |
| exon | 119962 | 120192 |
| exon | 120269 | 120454 |
| exon | 120519 | 120596 |
| exon | 120681 | 120875 |
| exon | 122476 | 122853 |
| exon | 123788 | 124972 |
| CDS | 116273 | 116485 |
| CDS | 116969 | 117133 |
| CDS | 117722 | 117835 |
| CDS | 117920 | 118021 |
| CDS | 118122 | 118328 |
| CDS | 118407 | 118625 |
| CDS | 118707 | 118814 |
| CDS | 118949 | 119119 |
| CDS | 119214 | 119411 |
| CDS | 119517 | 119876 |
| CDS | 119962 | 120192 |
| CDS | 120269 | 120454 |
| CDS | 120519 | 120596 |
| CDS | 120681 | 120875 |
| CDS | 122476 | 122853 |
| CDS | 123788 | 123976 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00565.16 | SNase | 137 | 198 |
| PF00565.16 | SNase | 322 | 413 |
| PF00565.16 | SNase | 665 | 762 |
| PF00567.23 | TUDOR | 780 | 903 |
| PF00565.16 | SNase | 911 | 1015 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0016442 | RNA-induced silencing complex |
| GO:0016788 | hydrolase activity, acting on ester bonds |
| GO:0031047 | gene silencing by RNA |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.