PH01001164G0620's details annotation
1.Annotation
ICBR annotation: ribosomal protein S17, putative, expressed
Blast result AT3G48930 : 5.20E-73
Blast annotation: Nucleic acid-binding, OB-fold-like protein
2.Location
Scaffold: PH01001164
Strand: -
| Region | Start | End |
| gene | 400129 | 405044 |
| mRNA | 400129 | 405044 |
| exon | 400129 | 401365 |
| exon | 401675 | 401764 |
| exon | 401849 | 401993 |
| exon | 403810 | 403910 |
| exon | 404002 | 404042 |
| exon | 404545 | 405044 |
| CDS | 401272 | 401365 |
| CDS | 401675 | 401764 |
| CDS | 401849 | 401993 |
| CDS | 403810 | 403910 |
| CDS | 404002 | 404042 |
| CDS | 404545 | 404556 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16205.4 | Ribosomal_S17_N | 4 | 72 |
| PF00366.19 | Ribosomal_S17 | 74 | 142 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S11e | ko03011 | K02949 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.