PH01001167G0120's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative
Blast result AT1G69550 : 3.40E-33
Blast annotation: disease resistance protein (TIR-NBS-LRR class)
2.Location
Scaffold: PH01001167
Strand: +
| Region | Start | End |
| gene | 75705 | 82395 |
| mRNA | 75705 | 82395 |
| exon | 75705 | 76090 |
| exon | 76338 | 79412 |
| exon | 80869 | 80987 |
| exon | 81939 | 82395 |
| CDS | 75887 | 76090 |
| CDS | 76338 | 79412 |
| CDS | 80869 | 80987 |
| CDS | 81939 | 82347 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000543 | GT1 GlycosylTransferases zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity, zinc_ion_transmembrane_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00560.32 | LRR_1 | 167 | 188 |
| PF13855.5 | LRR_8 | 284 | 341 |
| PF14299.5 | PP2 | 1104 | 1261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.