Annotation of co-expression genes

PH01001168G0540's details annotation

1.Annotation

ICBR annotation: no apical meristem protein, putative, expressed

Blast result AT2G02450 : 1.60E-76
Blast annotation: NAC domain containing protein 35

2.Location

Scaffold: PH01001168
Strand: -

RegionStartEnd
gene361403364762
mRNA361403364762
exon361403361829
exon362277362876
exon364049364317
exon364536364762
CDS361809361829
CDS362277362876
CDS364049364317
CDS364536364740

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000024HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
photosystem I,
chlorophyll binding,
DNA binding,
Photosynthesis
regulation of transcription, DNA-dependent,
RLK-Pelle_LRR-Xa (from iTAK)
sequence-specific DNA binding,
Photosynthesis
coexpression networkCFinderM001241translational initiation,
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)NAC
Transcription_Regulator(from PlantTFDB)NAC

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02365.14NAM24148

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.