PH01001169G0230's details annotation
1.Annotation
ICBR annotation: acyl-protein thioesterase, putative, expressed
Blast result AT5G20060 : 9.00E-106
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01001169
Strand: -
| Region | Start | End |
| gene | 133223 | 136702 |
| mRNA | 133223 | 136702 |
| exon | 133223 | 133491 |
| exon | 134558 | 134640 |
| exon | 134735 | 134885 |
| exon | 135202 | 135306 |
| exon | 135475 | 135544 |
| exon | 135620 | 135656 |
| exon | 136237 | 136702 |
| CDS | 133343 | 133491 |
| CDS | 134558 | 134640 |
| CDS | 134735 | 134885 |
| CDS | 135202 | 135306 |
| CDS | 135475 | 135544 |
| CDS | 135620 | 135656 |
| CDS | 136237 | 136496 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02230.15 | Abhydrolase_2 | 24 | 248 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerophospholipid metabolism | lysophospholipase II [EC:3.1.1.5] | ko00564 | K06130 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.