PH01001169G0450's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G52720 : 7.80E-15
Blast annotation: -
2.Location
Scaffold: PH01001169
Strand: -
| Region | Start | End |
| gene | 285219 | 289000 |
| mRNA | 285219 | 289000 |
| exon | 285219 | 289000 |
| CDS | 285523 | 285891 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000274 | Arachidonic_acid_metabolism oligopeptide transport, L-serine metabolic process, glycine metabolic process, Glutathione_metabolism |
| coexpression network | CFinderM000756 | Terpenoid_backbone_biosynthesis 1-deoxy-D-xylulose-5-phosphate synthase activity, terpenoid biosynthetic process, oligopeptide transport, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.