PH01001170G0240's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S27a, putative, expressed
Blast result AT2G47110 : 6.50E-64
Blast annotation: ubiquitin 6
2.Location
Scaffold: PH01001170
Strand: +
| Region | Start | End |
| gene | 158477 | 159196 |
| mRNA | 158477 | 159196 |
| exon | 158477 | 159196 |
| CDS | 158654 | 159121 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00240.22 | ubiquitin | 3 | 74 |
| PF01599.18 | Ribosomal_S27 | 102 | 148 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S27Ae | ko03011 | K02977 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.