Annotation of co-expression genes

PH01001173G0410's details annotation

1.Annotation

ICBR annotation: 3-5 exonuclease domain-containing protein, putative

Blast result AT4G13870 : 2.20E-20
Blast annotation: Werner syndrome-like exonuclease

2.Location

Scaffold: PH01001173
Strand: +

RegionStartEnd
gene240948241805
mRNA240948241805
exon240948241805
CDS241043241672

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000640GH17 Glycoside_Hydrolases
negative regulation of catalytic activity,
nucleobase-containing compound metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01612.19DNA_pol_A_exo149200

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0006139nucleobase-containing compound metabolic process
GO:00084083'-5' exonuclease activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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