PH01001175G0340's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT1G80400 : 1.20E-96
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01001175
Strand: +
| Region | Start | End |
| gene | 296159 | 302747 |
| mRNA | 296159 | 302747 |
| exon | 296159 | 296828 |
| exon | 298443 | 298471 |
| exon | 300190 | 300867 |
| exon | 301286 | 301411 |
| exon | 301487 | 301763 |
| exon | 301852 | 302747 |
| CDS | 296388 | 296828 |
| CDS | 298443 | 298471 |
| CDS | 300190 | 300867 |
| CDS | 301286 | 301411 |
| CDS | 301487 | 301763 |
| CDS | 301852 | 302079 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 519 | 560 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.