PH01001176G0150's details annotation
1.Annotation
ICBR annotation: omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
Blast result AT5G05580 : 2.00E-154
Blast annotation: fatty acid desaturase 8
2.Location
Scaffold: PH01001176
Strand: -
| Region | Start | End |
| gene | 118393 | 121165 |
| mRNA | 118393 | 121165 |
| exon | 118393 | 118783 |
| exon | 118874 | 119011 |
| exon | 119494 | 119574 |
| exon | 119699 | 119884 |
| exon | 119987 | 120079 |
| exon | 120179 | 120245 |
| exon | 120343 | 120432 |
| exon | 120537 | 121165 |
| CDS | 118595 | 118783 |
| CDS | 118874 | 119011 |
| CDS | 119494 | 119574 |
| CDS | 119699 | 119884 |
| CDS | 119987 | 120079 |
| CDS | 120179 | 120245 |
| CDS | 120343 | 120432 |
| CDS | 120537 | 120679 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00487.23 | FA_desaturase | 23 | 278 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Biosynthesis of unsaturated fatty acids | omega-3 fatty acid desaturase (delta-15 desaturase) [EC:1.14.19.-] | ko01040 | K10257 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.