PH01001176G0410's details annotation
1.Annotation
ICBR annotation: DNA topoisomerase 2, putative, expressed
Blast result AT3G23890 : 4.50E-38
Blast annotation: topoisomerase II
2.Location
Scaffold: PH01001176
Strand: -
| Region | Start | End |
| gene | 307329 | 309863 |
| mRNA | 307329 | 309863 |
| exon | 307329 | 307818 |
| exon | 307958 | 308174 |
| exon | 308240 | 309863 |
| CDS | 307445 | 307818 |
| CDS | 307958 | 308174 |
| CDS | 308240 | 308614 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00204.24 | DNA_gyraseB | 116 | 208 |
| PF12590.7 | Acyl-thio_N | 260 | 277 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity |
| GO:0005524 | ATP binding |
| GO:0006265 | DNA topological change |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.