PH01001176G0510's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G55990 : 1.40E-93
Blast annotation: Plant protein of unknown function (DUF828)
2.Location
Scaffold: PH01001176
Strand: +
| Region | Start | End |
| gene | 362881 | 366311 |
| mRNA | 362881 | 366311 |
| exon | 362881 | 364037 |
| exon | 364070 | 364398 |
| exon | 365044 | 365224 |
| exon | 365314 | 365513 |
| exon | 365632 | 366311 |
| CDS | 363660 | 364037 |
| CDS | 364070 | 364398 |
| CDS | 365044 | 365224 |
| CDS | 365314 | 365513 |
| CDS | 365632 | 365794 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 180 | 233 |
| PF13839.5 | PC-Esterase | 234 | 415 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.