PH01001177G0450's details annotation
1.Annotation
ICBR annotation: expansin precursor, putative, expressed
Blast result AT3G45970 : 1.10E-84
Blast annotation: expansin-like A1
2.Location
Scaffold: PH01001177
Strand: -
| Region | Start | End |
| gene | 262252 | 264953 |
| mRNA | 262252 | 264953 |
| exon | 262252 | 263798 |
| exon | 263887 | 264019 |
| exon | 264284 | 264462 |
| exon | 264563 | 264672 |
| exon | 264767 | 264953 |
| CDS | 263550 | 263798 |
| CDS | 263887 | 264019 |
| CDS | 264284 | 264462 |
| CDS | 264563 | 264672 |
| CDS | 264767 | 264911 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000447 | CMGC_MAPK (from iTAK) C3H Transcription_Regulator(from PlantTFDB) ubiquitin ligase complex, extracellular region, |
| coexpression network | CFinderM000986 | CMGC_MAPK (from iTAK) HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03330.17 | DPBB_1 | 67 | 143 |
| PF01357.20 | Pollen_allerg_1 | 156 | 239 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005576 | extracellular region |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.