PH01001180G0250's details annotation
1.Annotation
ICBR annotation: pollen-specific protein SF21, putative, expressed
Blast result AT5G56750 : 2.00E-133
Blast annotation: N-MYC downregulated-like 1
2.Location
Scaffold: PH01001180
Strand: -
| Region | Start | End |
| gene | 172565 | 179956 |
| mRNA | 172565 | 179956 |
| exon | 172565 | 172804 |
| exon | 172881 | 173016 |
| exon | 173249 | 173346 |
| exon | 173390 | 173467 |
| exon | 173551 | 173637 |
| exon | 173713 | 173773 |
| exon | 173860 | 173948 |
| exon | 174080 | 174177 |
| exon | 174301 | 174400 |
| exon | 177874 | 179956 |
| CDS | 172583 | 172804 |
| CDS | 172881 | 173016 |
| CDS | 173249 | 173346 |
| CDS | 173390 | 173467 |
| CDS | 173551 | 173637 |
| CDS | 173713 | 173773 |
| CDS | 173860 | 173948 |
| CDS | 174080 | 174177 |
| CDS | 174301 | 174400 |
| CDS | 177874 | 177936 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000243 | Alanine,_aspartate_and_glutamate_metabolism adenylosuccinate synthase activity, purine nucleotide biosynthetic process, cytokinesis microtubule cytoskeleton organization, RNA-dependent DNA replication, Purine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03096.13 | Ndr | 22 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.